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  5. Len_g04604

Len_g04604 (HIS1-3)


Aliases : HIS1-3

Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g04604
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g003228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23326 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06787 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08116 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05135 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36461 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene11879.t1 HIS1-3, Aspi01Gene11879 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene11880.t1 HIS1-3, Aspi01Gene11880 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene23118.t1 Aspi01Gene23118 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G028200.1 HIS1-3, Ceric.30G028200 linker histone *(H1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.71 HIS1-3 No description available 0.02 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g00585 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_5951905g0010 HIS1-3 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Msp_g09818 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04093 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09323 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e032965_P005 Zm00001e032965 linker histone (H1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 35 102
No external refs found!