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  5. Len_g03899

Len_g03899 (BRCA1, ATBRCA1)


Aliases : BRCA1, ATBRCA1

Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer & original description: none


Gene families : OG0001776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001776_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g03899
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00180030 BRCA1, ATBRCA1,... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00067800 BRCA1, ATBRCA1,... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.06 OrthoFinder output from all 47 species
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.03 OrthoFinder output from all 47 species
Aev_g22116 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Als_g16524 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Als_g40959 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Als_g44317 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aop_g08732 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aop_g10443 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Aspi01Gene29593.t1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Ceric.19G066200.1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Ceric.30G011100.1 BARD1, ROW1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020537.14 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.01 OrthoFinder output from all 47 species
Cre01.g018650 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g10242 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Dcu_g42186 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Gb_00493 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43300.1 BARD1, ROW1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.06 OrthoFinder output from all 47 species
LOC_Os05g43610.1 BRCA1, ATBRCA1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 OrthoFinder output from all 47 species
MA_12220g0020 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
MA_187851g0010 BRCA1, ATBRCA1 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.03 OrthoFinder output from all 47 species
MA_66542g0010 BRCA1, ATBRCA1 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.03 OrthoFinder output from all 47 species
Mp1g00070.1 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.05 OrthoFinder output from all 47 species
Nbi_g12141 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Nbi_g26771 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.07 OrthoFinder output from all 47 species
Ppi_g16822 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007705 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008687 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018874 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Smo414577 BARD1, ROW1, ATBARD1 Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Solyc06g008210.4.1 BARD1, ROW1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.02 OrthoFinder output from all 47 species
Spa_g04261 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Tin_g28171 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... 0.03 OrthoFinder output from all 47 species
Tin_g32798 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001357 BRCT_dom 727 789
No external refs found!