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  5. Len_g03656

Len_g03656 (SCN1)


Aliases : SCN1

Description : guanine nucleotide dissociation inhibitor *(RopGDI) & original description: none


Gene families : OG0001513 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001513_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g03656
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Als_g00528 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Als_g00548 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Als_g05419 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene41261.t1 SCN1, Aspi01Gene41261 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Len_g38538 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Lfl_g19948 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.02 OrthoFinder output from all 47 species
MA_10430494g0010 SCN1 guanine nucleotide dissociation inhibitor (RopGDI) 0.05 OrthoFinder output from all 47 species
Msp_g21563 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Pir_g00869 SCN1 guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Sam_g25794 No alias guanine nucleotide dissociation inhibitor *(RopGDI) &... 0.03 OrthoFinder output from all 47 species
Zm00001e027139_P001 SCN1, Zm00001e027139 guanine nucleotide dissociation inhibitor (RopGDI) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0007266 Rho protein signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000009 alpha-1,6-mannosyltransferase activity IEP HCCA
MF GO:0000030 mannosyltransferase activity IEP HCCA
MF GO:0004376 glycolipid mannosyltransferase activity IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000406 Rho_GDI 82 258
No external refs found!