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  5. Len_g03228

Len_g03228 (RPT4A)


Aliases : RPT4A

Description : regulatory component *(RPT4) of 26S proteasome & original description: none


Gene families : OG0004670 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g03228
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT1G45000 No alias AAA-type ATPase family protein 0.02 OrthoFinder output from all 47 species
AT5G43010 RPT4A regulatory particle triple-A ATPase 4A 0.06 OrthoFinder output from all 47 species
Adi_g060306 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aev_g05319 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g025873 No alias regulatory component *(RPT4) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000718.6 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Cre17.g710150 No alias Protein degradation.26S proteasome.regulatory... 0.08 OrthoFinder output from all 47 species
Dcu_g05314 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dcu_g05442 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Ehy_g07600 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Gb_31524 No alias regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
LOC_Os02g10640.1 LOC_Os02g10640 regulatory component RPT4 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Mp7g14270.1 No alias regulatory component RPT4 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Msp_g00514 No alias regulatory component *(RPT4) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Solyc01g109940.3.1 Solyc01g109940 regulatory component RPT4 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Tin_g16778 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Zm00001e014032_P001 Zm00001e014032 regulatory component RPT4 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e025009_P001 Zm00001e025009 regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e037434_P001 RPT4A, Zm00001e037434 regulatory component RPT4 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 331 373
IPR003959 ATPase_AAA_core 175 308
IPR032501 Prot_ATP_ID_OB_C 62 117
No external refs found!