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  5. Len_g00750

Len_g00750


Description : component *(VPS18) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004357 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004357_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g00750

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00178640 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Ala_g20601 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
Als_g03869 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
Aob_g17351 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
Ceric.34G031500.1 Ceric.34G031500 component *(VPS18) of HOPS/CORVET membrane tethering... 0.02 OrthoFinder output from all 47 species
Ehy_g04022 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species
GSVIVT01030005001 No alias Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
LOC_Os08g08060.1 LOC_Os08g08060 component VPS18 of HOPS/CORVET membrane tethering complexes 0.03 OrthoFinder output from all 47 species
Lfl_g02278 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.06 OrthoFinder output from all 47 species
Nbi_g01433 No alias component *(VPS18) of HOPS/CORVET membrane tethering... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007810 Pep3_Vps18 287 439
IPR000547 Clathrin_H-chain/VPS_repeat 641 780
No external refs found!