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  5. Len_g00746

Len_g00746 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: none


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g00746

Target Alias Description ECC score Gene Family Method Actions
AT4G03430 STA1, EMB2770 pre-mRNA splicing factor-related 0.04 OrthoFinder output from all 47 species
Aop_g29895 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cre14.g633650 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g14994 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01030385001 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g15860.1 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35550.1 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
MA_10436811g0010 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g11692 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Ore_g19399 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g32052 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Tin_g02882 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Zm00001e039748_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR010491 PRP1_N 97 265
No external refs found!