Nbi_g41769

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g41769
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00108620	PGP11,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AMTR_s00045p00109790	PGP11,...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00045p00109940	PGP11,...	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
AT1G27940	PGP13	P-glycoprotein 13	0.03	OrthoFinder output from all 47 species
AT3G28345	No alias	ABC transporter family protein	0.03	OrthoFinder output from all 47 species
AT4G18050	PGP9	P-glycoprotein 9	0.02	OrthoFinder output from all 47 species
Adi_g021749	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g087129	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g39147	No alias	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g17861	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14091	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g28385	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g40617	PGP10	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g12898	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08062	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g29915	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g38133	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g68609	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene12320.t2	PGP2, Aspi01Gene12320	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene32170.t1	ABCB14,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42794.t1	ATPGP4, PGP4,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene62054.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0010.g012029	ABCB19,...	subfamily ABCB transporter & original description: CDS=121-4035	0.03	OrthoFinder output from all 47 species
Azfi_s0039.g026389	PGP11	subfamily ABCB transporter & original description: CDS=323-4378	0.04	OrthoFinder output from all 47 species
Ceric.02G084300.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.1Z238200.1	Ceric.1Z238200	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.36G048300.1	Ceric.36G048300	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g06724	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g30302	PGP2	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g46023	PGP13	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g28462	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
LOC_Os02g09720.1	LOC_Os02g09720	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_1824g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_3448627g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_9148200g0010	No alias	ABC transporter B family member 15 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp3g11830.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp7g04390.1	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mpzg01120.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g17749	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g26680	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g44397	No alias	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g22891	PGP13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25953	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29607	No alias	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g30543	PGP18	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g33236	ABCB19,...	ABC-B-type transporter *(AMN3) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g57324	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g60074	PGP11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g03992	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g31570	PGP2	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291	PGP2	subfamily ABCB transporter & original description: CDS=1-4248	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019194	No alias	not classified & original description: CDS=54-1700	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197	No alias	subfamily ABCB transporter & original description: CDS=1-2220	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022862	No alias	not classified & original description: CDS=281-511	0.03	OrthoFinder output from all 47 species
Sam_g03287	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g34538	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g38892	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48720	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g52431	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Smo123915	PGP11	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc03g122070.3.1	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc06g009280.1.1	PGP11, Solyc06g009280	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc06g009290.4.1	PGP21, Solyc06g009290	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc11g067300.2.1	PGP11, Solyc11g067300	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc12g098840.3.1	PGP11, Solyc12g098840	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Tin_g06699	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g11197	PGP2	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g12815	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g35292	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g41430	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g46427	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e025438_P001	PGP21, Zm00001e025438	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1065	1210
IPR003439	ABC_transporter-like_ATP-bd	427	575
IPR011527	ABC1_TM_dom	723	991
IPR011527	ABC1_TM_dom	86	350

External Links

No external refs found!

Nbi_g41769

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation