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  5. Nbi_g39374

Nbi_g39374 (AMY1, ATAMY1)


Aliases : AMY1, ATAMY1

Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g39374
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cre08.g385500 AMY2, ATAMY2 Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
GSVIVT01020069001 AMY3, ATAMY3 Carbohydrate metabolism.starch... 0.05 OrthoFinder output from all 47 species
Sam_g16056 No alias alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 153 310
IPR012850 A-amylase_bs_C 464 524
No external refs found!