Nbi_g38833 (AGL21)

Aliases : AGL21

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g38833

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	ANR1, AGL44,...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
AMTR_s00002p00262760	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00047p00181740	AGL7, AP1,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00071p00198970	XAL1, AGL12,...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
AT2G26320	AGL33	AGAMOUS-like 33	0.03	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.03	OrthoFinder output from all 47 species
AT4G37940	AGL21	AGAMOUS-like 21	0.04	OrthoFinder output from all 47 species
Als_g44649	AGL6	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene12156.t1	AGL42, Aspi01Gene12156	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15810.t1	STK, AGL11,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17771.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene17777.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene17800.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene44552.t1	AGL13, Aspi01Gene44552	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene44619.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene52215.t1	GL19, AGL19,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0034.g025359	No alias	not classified & original description: CDS=5-295	0.04	OrthoFinder output from all 47 species
Ceric.39G001800.1	AGL104, Ceric.39G001800	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Dac_g11868	AGL104	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g49223	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g18067	AGL21	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g07446	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01019883001	GL19, AGL19	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Gb_03068	AGL16	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
LOC_Os06g01890.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.09	OrthoFinder output from all 47 species
LOC_Os12g31748.2	AGL8, FUL, LOC_Os12g31748	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g20331	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g26848	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g44573	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_69370g0010	AGL14	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Pir_g10184	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g26233	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004031	AGL29	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Sam_g33302	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g36311	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g48748	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Smo79393	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.11	OrthoFinder output from all 47 species
Solyc02g091550.2.1	AGL21, Solyc02g091550	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Solyc05g012020.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Solyc05g056620.2.1	AGL7, AP1, Solyc05g056620	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc06g069430.3.1	AGL8, FUL, Solyc06g069430	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Spa_g04680	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e018993_P001	AGL62, Zm00001e018993	transcription factor (MADS/AGL)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	74	121
IPR002487	TF_Kbox	149	220

External Links

No external refs found!

Nbi_g38833 (AGL21)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation