Nbi_g38697

Description : subfamily ABCD transporter & original description: none

Gene families : OG0002493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002493_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g38697

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00199450	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Adi_g008075	No alias	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001368.15	No alias	ABC transporter D family member 2, chloroplastic...	0.02	OrthoFinder output from all 47 species
Ehy_g06061	No alias	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
MA_10436224g0010	No alias	subfamily ABCD transporter	0.04	OrthoFinder output from all 47 species
Mp2g18020.1	No alias	subfamily ABCD transporter	0.05	OrthoFinder output from all 47 species
Pir_g15673	No alias	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g31759	No alias	subfamily ABCD transporter & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e026058_P001	Zm00001e026058	subfamily ABCD transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	152	410
IPR003439	ABC_transporter-like_ATP-bd	520	726

External Links

No external refs found!