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  5. Nbi_g29804

Nbi_g29804


Description : component *(YIP4) of trans-Golgi-network (TGN) trafficking complex & original description: none


Gene families : OG0003354 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003354_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g29804

Target Alias Description ECC score Gene Family Method Actions
AT4G30260 No alias Integral membrane Yip1 family protein 0.03 OrthoFinder output from all 47 species
Adi_g079566 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.02 OrthoFinder output from all 47 species
Adi_g114978 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.04 OrthoFinder output from all 47 species
Aev_g05740 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Ala_g03841 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Aop_g12289 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.25 No alias Vesicle trafficking.endomembrane... 0.01 OrthoFinder output from all 47 species
Cre07.g326400 No alias Vesicle trafficking.endomembrane... 0.03 OrthoFinder output from all 47 species
LOC_Os01g64760.1 LOC_Os01g64760 YPT protein of trans-Golgi-network (TGN) trafficking 0.02 OrthoFinder output from all 47 species
LOC_Os05g36150.1 LOC_Os05g36150 YPT protein of trans-Golgi-network (TGN) trafficking 0.03 OrthoFinder output from all 47 species
Len_g37269 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Mp1g02620.1 No alias YPT protein of trans-Golgi-network (TGN) trafficking 0.04 OrthoFinder output from all 47 species
Msp_g04435 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Pir_g12802 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Spa_g29089 No alias component *(YIP4) of trans-Golgi-network (TGN)... 0.03 OrthoFinder output from all 47 species
Zm00001e019161_P001 Zm00001e019161 YPT protein of trans-Golgi-network (TGN) trafficking 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004615 phosphomannomutase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006848 pyruvate transport IEP HCCA
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009298 GDP-mannose biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015718 monocarboxylic acid transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019673 GDP-mannose metabolic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901475 pyruvate transmembrane transport IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR006977 Yip1_dom 201 333
No external refs found!