1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g29613

Nbi_g29613 (PGP11)


Aliases : PGP11

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g29613

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00263610 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00108620 PGP11,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00109790 PGP11,... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AMTR_s00049p00128390 PGP16,... ABC transporter B family member 16 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00128460 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.02 OrthoFinder output from all 47 species
AT3G28360 PGP16 P-glycoprotein 16 0.02 OrthoFinder output from all 47 species
AT3G62150 PGP21 P-glycoprotein 21 0.03 OrthoFinder output from all 47 species
AT4G25960 PGP2 P-glycoprotein 2 0.03 OrthoFinder output from all 47 species
Adi_g058585 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105656 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21203 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25151 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g29011 PGP10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18811 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22635 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40617 PGP10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24610 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38133 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13015.t1 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46795.t1 PGP2, Aspi01Gene46795 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0039.g026389 PGP11 subfamily ABCB transporter & original description: CDS=323-4378 0.03 OrthoFinder output from all 47 species
Ceric.10G031400.1 PGP13, Ceric.10G031400 subfamily ABCB transporter & original description:... 0.03 OrthoFinder output from all 47 species
Cre17.g725150 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g06939 PGP13 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07802 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13985 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23401 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45466 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47815 PGP11 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g00972 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41259 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13730 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21294 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23811 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015306001 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_07563 ABCB19,... subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_13908 PGP10 ABC transporter B family member 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_32125 PGP11 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_32127 PGP11 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_33057 ABCB19,... subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_33058 ABCB19,... subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_36862 PGP21 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os01g50100.1 PGP11, LOC_Os01g50100 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g50160.1 PGP11, LOC_Os01g50160 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os02g09720.1 LOC_Os02g09720 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_10432922g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_145496g0010 No alias ABC transporter B family member 15 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_3437g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_636449g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_6958g0010 PGP21 ABC transporter B family member 21 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
MA_82945g0030 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp3g11830.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Mpzg01120.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g17749 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32270 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44397 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08816 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19207 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38163 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43029 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04029 PGP11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g26459 ABCB19,... subfamily ABCB transporter & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g49419 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20355 PGP21 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_7260V3.1 ABCB19,... ATP binding cassette subfamily B19 0.02 OrthoFinder output from all 47 species
Ppi_g13619 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22415 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31570 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010416 ABCB19,... subfamily ABCB transporter & original description: CDS=327-1289 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291 PGP2 subfamily ABCB transporter & original description: CDS=1-4248 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0478.g027420 PGP7 not classified & original description: CDS=1-1809 0.01 OrthoFinder output from all 47 species
Sam_g03287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo148837 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo408755 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Solyc02g087410.4.1 Solyc02g087410 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Solyc06g009280.1.1 PGP11, Solyc06g009280 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Solyc06g009290.4.1 PGP21, Solyc06g009290 subfamily ABCB transporter 0.06 OrthoFinder output from all 47 species
Solyc12g098840.3.1 PGP11, Solyc12g098840 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Spa_g19381 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023274_P001 PGP2, Zm00001e023274 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Zm00001e028117_P001 PGP11, Zm00001e028117 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Zm00001e041087_P002 Zm00001e041087 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006996 organelle organization IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1065 1215
IPR011527 ABC1_TM_dom 52 325
IPR011527 ABC1_TM_dom 726 998
IPR003439 ABC_transporter-like_ATP-bd 394 542
No external refs found!