Nbi_g29042 (HY3, OOP1, PHYB)

Aliases : HY3, OOP1, PHYB

Description : temperature sensor protein *(PHY-B) & original description: none

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g29042

Target	Alias	Description	ECC score	Gene Family Method
Ala_g02606	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02630	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g18615	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene37198.t1	HY3, OOP1, PHYB,...	phytochrome photoreceptor *(PHY) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene63547.t1	HY3, OOP1, PHYB,...	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0234.g059451	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description:...	0.04	OrthoFinder output from all 47 species
Cba_g22887	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g36588	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g14275	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g32315	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g19599	No alias	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g14459	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g20479	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013654	PAS_2	85	202
IPR003661	HisK_dim/P	914	972
IPR013767	PAS_fold	635	750
IPR013767	PAS_fold	766	888
IPR003018	GAF	236	417
IPR003594	HATPase_C	1022	1133
IPR013515	Phytochrome_cen-reg	430	603

External Links

No external refs found!

Nbi_g29042 (HY3, OOP1, PHYB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation