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  5. Nbi_g28892

Nbi_g28892 (SMD1, RDR2)


Aliases : SMD1, RDR2

Description : not classified & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g28892

Target Alias Description ECC score Gene Family Method Actions
AT3G49500 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 0.03 OrthoFinder output from all 47 species
Aob_g39991 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14066 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007792001 SMD1, RDR2 RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.02 OrthoFinder output from all 47 species
Gb_17278 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_28433 ATRDRP1, RDR1 ssRNA polymerase (RDR2) 0.02 OrthoFinder output from all 47 species
Gb_39056 SMD1, RDR2 RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g09805 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25333 No alias ssRNA polymerase *(RDR6) & original description: none 0.05 OrthoFinder output from all 47 species
Smo126929 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Tin_g06684 SMD1, RDR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 309 878
IPR000504 RRM_dom 13 75
No external refs found!