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  5. Nbi_g27546

Nbi_g27546 (EMB1135)


Aliases : EMB1135

Description : not classified & original description: none


Gene families : OG0002623 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002623_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27546

Target Alias Description ECC score Gene Family Method Actions
AT1G79350 EMB1135 RING/FYVE/PHD zinc finger superfamily protein 0.05 OrthoFinder output from all 47 species
Ala_g16049 EMB1135 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08125 EMB1135 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre01.g053250 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre02.g095045 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre07.g350100 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre13.g578501 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g13353 EMB1135 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g52030.1 EMB1135, LOC_Os04g52030 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Mp1g14790.1 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Ore_g15402 EMB1135 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e040038_P001 EMB1135, Zm00001e040038 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 780 1071
IPR039187 SNO_AAA 222 522
IPR019787 Znf_PHD-finger 699 745
No external refs found!