AT4G25270

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT4G25270
Cluster	HCCA cluster: Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
MA_10436764g0010	No alias	No description available	0.01	Gene family
MA_112849g0010	No alias	No description available	0.02	Gene family
MA_20599g0020	No alias	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.01	Gene family
Smo84339	PACid_15416290	35.1.5 not assigned.no ontology.pentatricopeptide (PPR)...	0.02	Gene family
Solyc01g095690.2.1	Solyc01g095690.2	No description available	0.02	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IMP	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	379	438
IPR002885	Pentatricopeptide_repeat	161	205
IPR002885	Pentatricopeptide_repeat	259	303
IPR002885	Pentatricopeptide_repeat	233	256
IPR002885	Pentatricopeptide_repeat	332	357
IPR002885	Pentatricopeptide_repeat	133	156
IPR002885	Pentatricopeptide_repeat	500	525

External Links

No external refs found!