AT4G23820


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000179 (Gene family) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G23820
Cluster HCCA cluster: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01026985001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os02g54030 Os02g0781000 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os03g03350 Os03g0124900 10.6.3 cell wall.degradation.pectate lyases and... 0.01 Gene family
LOC_Os05g50960 Os05g0587000 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
LOC_Os12g36810 Os12g0554800 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_10436451g0010 No alias No description available 0.02 Gene family
Smo78556 PACid_15422235 No description available 0.02 Gene family
Solyc06g009790.3.1 Solyc06g009790.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc08g081480.3.1 Solyc08g081480.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc09g075460.3.1 Solyc09g075460.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d011369 GRMZM2G052844 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d023813 GRMZM2G113815 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Zm00001d052103 GRMZM2G047414,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0005975 carbohydrate metabolic process ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 137 417
No external refs found!