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  5. Nbi_g27247

Nbi_g27247 (ARLIM15, DMC1, ATDMC1)


Aliases : ARLIM15, DMC1, ATDMC1

Description : recombinase *(DMC1) & original description: none


Gene families : OG0001716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27247
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Ceric.25G033900.1 ARLIM15, DMC1,... recombinase *(DMC1) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g45185 ARLIM15, DMC1, ATDMC1 recombinase *(DMC1) & original description: none 0.11 OrthoFinder output from all 47 species
Ore_g45230 RAD51, ATRAD51 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo408953 RAD51, ATRAD51 DNA repair protein RAD51 homolog OS=Solanum lycopersicum 0.01 OrthoFinder output from all 47 species
Spa_g49520 ARLIM15, DMC1, ATDMC1 recombinase *(DMC1) & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e020831_P002 ARLIM15, DMC1,... recombinase (DMC1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR013632 DNA_recomb/repair_Rad51_C 89 340
No external refs found!