1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g26733

Nbi_g26733


Description : carotenoid isomerase *(DWARF27) & original description: none


Gene families : OG0001572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001572_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g26733
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00255680 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic... 0.09 OrthoFinder output from all 47 species
AT1G64680 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.09 OrthoFinder output from all 47 species
Adi_g033681 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g02991 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Ala_g06641 No alias carotenoid isomerase *(DWARF27) & original description: none 0.14 OrthoFinder output from all 47 species
Ala_g11103 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Als_g00455 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g31538 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g13955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19690 No alias carotenoid isomerase *(DWARF27) & original description: none 0.14 OrthoFinder output from all 47 species
Aspi01Gene11607.t1 Aspi01Gene11607 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008838 No alias carotenoid isomerase *(DWARF27) & original description:... 0.05 OrthoFinder output from all 47 species
Azfi_s0386.g067568 No alias not classified & original description: CDS=62-952 0.05 OrthoFinder output from all 47 species
Ceric.02G115700.1 Ceric.02G115700 carotenoid isomerase *(DWARF27) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.09G025400.1 Ceric.09G025400 not classified & original description: pacid=50588408... 0.03 OrthoFinder output from all 47 species
Dac_g13831 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02296 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12391 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g03239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species
Gb_18729 No alias carotenoid isomerase (DWARF27) 0.06 OrthoFinder output from all 47 species
LOC_Os08g02210.2 LOC_Os08g02210 Beta-carotene isomerase D27, chloroplastic... 0.06 OrthoFinder output from all 47 species
Len_g16141 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g11491 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g13325 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g11577 No alias carotenoid isomerase *(DWARF27) & original description: none 0.11 OrthoFinder output from all 47 species
Ore_g19910 No alias carotenoid isomerase *(DWARF27) & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g09207 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Pnu_g26521 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g62487 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017141 No alias carotenoid isomerase *(DWARF27) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g06073 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Smo173467 No alias Phytohormones.strigolactone.synthesis.DWARF27... 0.07 OrthoFinder output from all 47 species
Smo99956 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Solyc08g008630.4.1 Solyc08g008630 Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.08 OrthoFinder output from all 47 species
Spa_g05404 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g19072 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g28773 No alias carotenoid isomerase *(DWARF27) & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e011261_P001 Zm00001e011261 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029191_P001 Zm00001e029191 Beta-carotene isomerase D27, chloroplastic... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025114 D27-like_C 212 294
No external refs found!