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  5. Nbi_g25933

Nbi_g25933


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g25933
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00081p00019740 CRR22,... Pentatricopeptide repeat-containing protein At5g27110... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
AMTR_s03531p00004900 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.04 OrthoFinder output from all 47 species
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g101336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44555 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16773 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06390 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19283 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26537 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30723 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30867 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g54765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55221 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60956 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27561 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13985 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene48128.t1 Aspi01Gene48128 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene52145.t1 CRR22, Aspi01Gene52145 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03800 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20670 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29852 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34918 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g45942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.02G071400.1 Ceric.02G071400 not classified & original description: pacid=50584970... 0.07 OrthoFinder output from all 47 species
Dac_g43531 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g45650 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16948 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42993 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g44574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_21443 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g10090.1 LOC_Os01g10090 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os02g01610.1 LOC_Os02g01610 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
Len_g03276 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g44132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54668 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_121102g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_138676g0010 EMB2261 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Msp_g04472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g08590 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13328 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23085 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g23186 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28794 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24821 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28389 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12723 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g46621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53359 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016088 No alias not classified & original description: CDS=1-1020 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022629 No alias not classified & original description: CDS=614-2965 0.02 OrthoFinder output from all 47 species
Sam_g26323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo136241 EMB2758 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.07 OrthoFinder output from all 47 species
Smo76411 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Solyc02g014360.3.1 LOI1, MEF11,... RNA editing factor (MEF11) 0.02 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.07 OrthoFinder output from all 47 species
Solyc03g063690.1.1 MEF1, Solyc03g063690 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.02 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.02 OrthoFinder output from all 47 species
Solyc11g040060.3.1 EMB2758, Solyc11g040060 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.07 OrthoFinder output from all 47 species
Spa_g14568 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g20273 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23698 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g28117 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06527 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18985 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000621_P001 CRR22, Zm00001e000621 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 662 692
IPR002885 Pentatricopeptide_repeat 634 657
IPR002885 Pentatricopeptide_repeat 158 184
IPR002885 Pentatricopeptide_repeat 258 288
IPR002885 Pentatricopeptide_repeat 332 356
IPR002885 Pentatricopeptide_repeat 534 554
IPR002885 Pentatricopeptide_repeat 457 505
IPR002885 Pentatricopeptide_repeat 357 404
IPR002885 Pentatricopeptide_repeat 862 908
IPR002885 Pentatricopeptide_repeat 760 807
No external refs found!