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  5. Nbi_g24034

Nbi_g24034


Description : histone *(H2B) & original description: none


Gene families : OG0000176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g24034

Target Alias Description ECC score Gene Family Method Actions
AT3G46030 HTB11 Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g38274 HTB4 histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38176 HTB4 histone *(H2B) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.20G039500.1 HTB4, Ceric.20G039500 histone *(H2B) & original description: pacid=50566293... 0.03 OrthoFinder output from all 47 species
Ceric.24G053000.1 HTB4, Ceric.24G053000 histone *(H2B) & original description: pacid=50628469... 0.03 OrthoFinder output from all 47 species
Ceric.24G053100.1 HTB4, Ceric.24G053100 histone *(H2B) & original description: pacid=50628870... 0.03 OrthoFinder output from all 47 species
Ceric.27G026200.1 Ceric.27G026200 histone *(H2B) & original description: pacid=50606193... 0.03 OrthoFinder output from all 47 species
Cre06.g264800 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g264900 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g265400 HTB4 Chromatin organisation.histones.H2B-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g266750 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g268100 HTB4 Chromatin organisation.histones.H2B-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g268250 HTB4 Chromatin organisation.histones.H2B-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g273850 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274250 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274750 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g275800 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276550 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g276900 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g504550 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g504700 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre12.g505600 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g506200 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre13.g570050 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g709150 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g710450 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g711750 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g713450 HTB4 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g714050 HTB4 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from all 47 species
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from all 47 species
LOC_Os01g05630.1 HTB11, LOC_Os01g05630 histone (H2B) 0.03 OrthoFinder output from all 47 species
LOC_Os05g49860.1 HTB11, LOC_Os05g49860 histone (H2B) 0.03 OrthoFinder output from all 47 species
MA_10435143g0020 HTB11 histone (H2B) 0.03 OrthoFinder output from all 47 species
Mp4g13450.1 HTB11 histone (H2B) 0.03 OrthoFinder output from all 47 species
Mp6g04070.1 No alias histone (H2B) 0.03 OrthoFinder output from all 47 species
Sam_g35037 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g075800.1.1 HTB11, Solyc06g075800 histone (H2B) 0.03 OrthoFinder output from all 47 species
Spa_g15129 No alias histone *(H2B) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023342_P001 HTB4, Zm00001e023342 histone (H2B) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 8 124
No external refs found!