AT3G52450 (PUB22)


Aliases : PUB22

Description : plant U-box 22


Gene families : OG_01_0000079 (Gene family) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G52450
Cluster HCCA cluster: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.01 Gene family
GSVIVT01006481001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
GSVIVT01011139001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
GSVIVT01011140001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
GSVIVT01026542001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.03 Gene family
LOC_Os01g64570 Os01g0865700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.05 Gene family
LOC_Os02g33590 Os02g0539200 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.05 Gene family
LOC_Os02g33680 Os02g0540700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
LOC_Os02g34410 Os02g0548700 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.03 Gene family
LOC_Os04g34030 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
LOC_Os04g49970 Os04g0589700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
LOC_Os04g58920 Os04g0686000 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
LOC_Os08g04470 Os08g0139400 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
LOC_Os12g06410 Os12g0161100 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_10432813g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.01 Gene family
MA_212555g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.01 Gene family
MA_311559g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
MA_33190g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_415393g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.01 Gene family
MA_69133g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.02 Gene family
Smo416356 PACid_15422407 No description available 0.02 Gene family
Smo426053 PACid_15404973 No description available 0.02 Gene family
Solyc01g007010.3.1 Solyc01g007010.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Solyc01g007020.3.1 Solyc01g007020.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Solyc01g007030.3.1 Solyc01g007030.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Solyc01g007040.3.1 Solyc01g007040.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Solyc01g007050.2.1 Solyc01g007050.2 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Solyc01g107980.3.1 Solyc01g107980.3 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.03 Gene family
Solyc04g071030.1.1 Solyc04g071030.1 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.03 Gene family
Solyc11g005700.1.1 Solyc11g005700.1 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.02 Gene family
Solyc11g068920.1.1 Solyc11g068920.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Solyc11g068940.1.1 Solyc11g068940.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.05 Gene family
Zm00001d001769 GRMZM2G013776 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Zm00001d002498 GRMZM2G092128 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Zm00001d016730 GRMZM2G071484 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.05 Gene family
Zm00001d023480 GRMZM2G031624 35.1 not assigned.no ontology TTF-type zinc finger... 0.03 Gene family
Zm00001d025379 GRMZM2G059042 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.03 Gene family
Zm00001d026040 GRMZM2G169690 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Zm00001d042738 GRMZM2G135713 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d050689 GRMZM2G127690 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d050712 GRMZM5G811633 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0002679 respiratory burst involved in defense response IGI Arabidopsis.org
BP GO:0002679 respiratory burst involved in defense response RCA Arabidopsis.org
MF GO:0004842 ubiquitin-protein transferase activity IDA Arabidopsis.org
MF GO:0004842 ubiquitin-protein transferase activity IGI Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
BP GO:0006865 amino acid transport RCA Arabidopsis.org
BP GO:0006952 defense response IGI Arabidopsis.org
BP GO:0009414 response to water deprivation IMP Arabidopsis.org
BP GO:0010200 response to chitin IEP Arabidopsis.org
BP GO:0010200 response to chitin RCA Arabidopsis.org
BP GO:0015824 proline transport RCA Arabidopsis.org
BP GO:0016567 protein ubiquitination IDA Arabidopsis.org
BP GO:0051865 protein autoubiquitination IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 7 76
No external refs found!