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  5. Nbi_g23764

Nbi_g23764 (MAC3B)


Aliases : MAC3B

Description : E3 ubiquitin protein ligase *(PUB60) & original description: none


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g23764

Target Alias Description ECC score Gene Family Method Actions
Ceric.06G040200.1 MAC3A, Ceric.06G040200 E3 ubiquitin protein ligase *(PUB60) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g02996 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
MA_20260g0010 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Zm00001e012723_P001 MAC3B, Zm00001e012723 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR013915 Pre-mRNA_splic_Prp19 66 130
IPR001680 WD40_repeat 256 293
IPR001680 WD40_repeat 388 423
IPR001680 WD40_repeat 220 251
IPR001680 WD40_repeat 301 338
IPR001680 WD40_repeat 482 512
No external refs found!