Nbi_g22351

Description : not classified & original description: none

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g22351

Target	Alias	Description	ECC score	Gene Family Method
AT1G58060	No alias	RNA helicase family protein	0.02	OrthoFinder output from all 47 species
MA_177779g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ore_g43492	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44903	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12240	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c17_19726V3.1	Pp3c17_19726	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Ppi_g09359	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g47720	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	496	624
IPR007502	Helicase-assoc_dom	688	774
IPR011709	DEAD-box_helicase_OB_fold	846	927
IPR011545	DEAD/DEAH_box_helicase_dom	239	393

External Links

No external refs found!