AT3G16890 (PPR40)


Aliases : PPR40

Description : pentatricopeptide (PPR) domain protein 40


Gene families : OG_01_0009801 (Gene family) Phylogenetic Tree(s): OG0009801_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT3G16890
Cluster HCCA cluster: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g37100 Os12g0557800 No description available 0.02 Gene family
Solyc01g060245.1.1 Solyc01g060245.1 No description available 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0006979 response to oxidative stress IMP Arabidopsis.org
BP GO:0009651 response to salt stress IMP Arabidopsis.org
BP GO:0009737 response to abscisic acid IMP Arabidopsis.org
BP GO:0042775 mitochondrial ATP synthesis coupled electron transport IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 424 470
IPR002885 Pentatricopeptide_repeat 563 611
IPR002885 Pentatricopeptide_repeat 216 260
IPR002885 Pentatricopeptide_repeat 493 542
IPR002885 Pentatricopeptide_repeat 183 211
No external refs found!