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  5. Nbi_g19162

Nbi_g19162 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g19162
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AMTR_s00186p00018500 SCL1,... RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
AT1G50600 SCL5 scarecrow-like 5 0.06 OrthoFinder output from all 47 species
AT2G04890 SCL21 SCARECROW-like 21 0.02 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.07 OrthoFinder output from all 47 species
Adi_g023686 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105371 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04153 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g37460 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02325 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g08305 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12229 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14420 PAT1 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Als_g10196 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g12263 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g17653 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21753 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05233 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05274 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01362 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g10570 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26689 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g69531 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0084.g039020 PAT1 GRAS-type transcription factor & original description: CDS=1-2502 0.04 OrthoFinder output from all 47 species
Cba_g22814 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G109900.1 PAT1, Ceric.01G109900 GRAS-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.14G087500.1 PAT1, Ceric.14G087500 GRAS-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.26G064200.1 PAT1, Ceric.26G064200 GRAS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g00898 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g06827 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g22968 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g05689 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12997 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03424 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g03441 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g19426 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02729 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02859 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08580 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01007007001 SCL21 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01014570001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
GSVIVT01026482001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01037777001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
Gb_03123 PAT1 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os07g36170.2 PAT1, LOC_Os07g36170 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Len_g12269 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Len_g17559 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g20939 PAT1 GRAS-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Lfl_g18488 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g28608 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g30488 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06138 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10420 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g27471 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g06251 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10322 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11761 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g24150 SCL13 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36507 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16566 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g55042 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007649 SCL5 GRAS-type transcription factor & original description: CDS=1-2229 0.04 OrthoFinder output from all 47 species
Solyc05g054170.4.1 SCL13, Solyc05g054170 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.07 OrthoFinder output from all 47 species
Solyc07g063940.2.1 PAT1, Solyc07g063940 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc11g012510.3.1 SCL13, Solyc11g012510 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc12g005340.3.1 PAT1, Solyc12g005340 transcription factor (GRAS) 0.08 OrthoFinder output from all 47 species
Spa_g07387 PAT1 GRAS-type transcription factor & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g14334 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g15312 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g23112 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g46955 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04128 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14260 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e010646_P001 PAT1, Zm00001e010646 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 410 776
No external refs found!