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  5. Nbi_g18019

Nbi_g18019


Description : not classified & original description: none


Gene families : OG0000255 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000255_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g18019

Target Alias Description ECC score Gene Family Method Actions
AT2G35540 No alias DNAJ heat shock N-terminal domain-containing protein 0.02 OrthoFinder output from all 47 species
AT4G19590 No alias Chaperone DnaJ-domain superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g087018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0463.g072339 No alias not classified & original description: CDS=99-692 0.03 OrthoFinder output from all 47 species
Ceric.1Z097000.1 Ceric.1Z097000 not classified & original description: pacid=50640979... 0.03 OrthoFinder output from all 47 species
Dac_g07351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030061001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g14996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004721 No alias not classified & original description: CDS=1-2922 0.03 OrthoFinder output from all 47 species
Solyc01g098250.4.1 Solyc01g098250 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g17540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036676_P001 Zm00001e036676 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e040755_P001 Zm00001e040755 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR024593 DUF3444 784 981
IPR001623 DnaJ_domain 74 135
No external refs found!