Nbi_g16243


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000000 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g16243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 39 species
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.01 OrthoFinder output from all 39 species
AT2G47110 UBQ6 ubiquitin 6 0.01 OrthoFinder output from all 39 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.01 OrthoFinder output from all 39 species
AT3G62250 UBQ5 ubiquitin 5 0.01 OrthoFinder output from all 39 species
Adi_g023730 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Adi_g035733 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g039126 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g065891 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Adi_g068545 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g071992 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g075316 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Adi_g082122 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g089560 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Adi_g123261 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g127668 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g127670 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g128109 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Adi_g128936 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Aev_g04957 No alias UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Aev_g10178 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Aev_g32871 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Aev_g36040 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Ala_g05389 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ala_g22571 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ala_g31081 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g19149 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g23563 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Als_g38959 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g39062 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g39296 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g39339 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g41346 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g44580 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Als_g46377 No alias UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g47623 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g50562 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Als_g54391 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g55223 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Als_g55689 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Als_g56193 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Als_g56827 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Als_g59004 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Aob_g10678 UBQ10 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g27404 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g37405 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Aob_g40904 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Aop_g33509 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Aop_g54940 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g58962 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g68680 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Aop_g71299 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g21481 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Cba_g43366 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Cba_g44094 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g45522 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g45891 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g54800 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g60335 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g66301 No alias not classified & original description: none 0.02 OrthoFinder output from all 39 species
Cba_g66919 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g69279 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Cba_g69893 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g77136 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Ceric.12G071300.1 UBQ14, Ceric.12G071300 UBQ ubiquitin-fold protein & original description:... 0.01 OrthoFinder output from all 39 species
Ceric.12G071400.1 UBQ14, Ceric.12G071400 UBQ ubiquitin-fold protein & original description:... 0.01 OrthoFinder output from all 39 species
Ceric.12G071900.1 Ceric.12G071900 not classified & original description: pacid=50600522... 0.01 OrthoFinder output from all 39 species
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 39 species
Cre11.g467567 UBQ10 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 39 species
Dcu_g26127 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g30486 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Dcu_g41723 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g43077 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g44370 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dde_g45735 No alias UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g26774 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g27045 No alias UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g27161 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g27268 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g27372 UBQ4 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g29921 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Ehy_g30848 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g31383 UBQ14 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Gb_28249 UBQ4 ubiquitin-fold protein (UBQ) 0.01 OrthoFinder output from all 39 species
LOC_Os01g22490.1 UBQ6, LOC_Os01g22490 component RPS27a of SSU proteome 0.01 OrthoFinder output from all 39 species
LOC_Os03g13170.1 LOC_Os03g13170 component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Len_g52783 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Lfl_g26614 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
MA_3292669g0010 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum... 0.01 OrthoFinder output from all 39 species
Mp7g12760.1 UBQ6 component RPS27a of SSU proteome 0.01 OrthoFinder output from all 39 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Msp_g29904 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Nbi_g30294 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ore_g28104 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ore_g37724 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Pnu_g07156 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.01 OrthoFinder output from all 39 species
Pp3c12_18200V3.1 UBQ4, Pp3c12_18200 polyubiquitin 10 0.01 OrthoFinder output from all 39 species
Pp3c12_5760V3.1 UBQ6, Pp3c12_5760 ubiquitin 6 0.01 OrthoFinder output from all 39 species
Pp3c3_25480V3.1 Pp3c3_25480 ubiquitin extension protein 1 0.01 OrthoFinder output from all 39 species
Pp3c8_14230V3.1 UBQ6, Pp3c8_14230 ubiquitin 6 0.01 OrthoFinder output from all 39 species
Ppi_g04791 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Ppi_g10448 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ppi_g20327 No alias UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ppi_g24132 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ppi_g53290 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Sam_g46861 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Smo228943 UBQ4 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 39 species
Solyc08g008590.4.1 Solyc08g008590 component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Solyc08g083120.3.1 Solyc08g083120 component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Spa_g03777 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 39 species
Spa_g45618 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Tin_g35440 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g35442 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g35480 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g35502 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Tin_g38799 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g39911 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g40418 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g42651 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g43814 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Zm00001e000962_P001 Zm00001e000962 component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Zm00001e009474_P001 Zm00001e009474 component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Zm00001e026237_P001 UBQ6, Zm00001e026237 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 39 species
Zm00001e028916_P001 UBQ6, Zm00001e028916 component RPS27a of SSU proteome 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 99 148
IPR000626 Ubiquitin-like_dom 24 95
No external refs found!