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  5. Nbi_g15141

Nbi_g15141 (APRR1, AtTOC1, TOC1, PRR1)


Aliases : APRR1, AtTOC1, TOC1, PRR1

Description : circadian clock evening oscillator component *(TOC1) of circadian clock & original description: none


Gene families : OG0002425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002425_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15141

Target Alias Description ECC score Gene Family Method Actions
Adi_g059983 APRR1, AtTOC1, TOC1, PRR1 circAdian clock evening oscillator component *(TOC1) of... 0.02 OrthoFinder output from all 47 species
Adi_g116998 APRR9, TL1, PRR9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030455 APRR1, AtTOC1, TOC1, PRR1 circadian clock evening oscillator component *(TOC1) of... 0.03 OrthoFinder output from all 47 species
Ceric.26G022500.1 APRR1, AtTOC1,... circadian clock evening oscillator component *(TOC1) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 435 477
IPR001789 Sig_transdc_resp-reg_receiver 8 119
No external refs found!