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  5. Nbi_g13508

Nbi_g13508


Description : scaffold component *(FRY) of RAM signalling pathway & original description: none


Gene families : OG0004160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g13508
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Ala_g02730 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.02 OrthoFinder output from all 47 species
Dcu_g04159 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58410.1 LOC_Os02g58410 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g25800 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
Smo84835 No alias No description available 0.04 OrthoFinder output from all 47 species
Zm00001e023521_P004 Zm00001e023521 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR025614 Cell_morpho_N 87 630
IPR029473 MOR2-PAG1_mid 670 1775
IPR025481 Cell_Morphogen_C 1800 2090
No external refs found!