AT1G55890


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000772 (Gene family) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G55890
Cluster HCCA cluster: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018992001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g079830.1.1 Solyc02g079830.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g085650.3.1 Solyc02g085650.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc03g031460.1.1 Solyc03g031460.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d012606 GRMZM2G139141 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d017317 GRMZM2G165290 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0008150 biological_process ND Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 115 140
IPR002885 Pentatricopeptide_repeat 146 170
IPR002885 Pentatricopeptide_repeat 178 222
IPR002885 Pentatricopeptide_repeat 283 332
No external refs found!