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  5. Nbi_g12711

Nbi_g12711 (HUA2)


Aliases : HUA2

Description : HUA2-type transcription factor & original description: none


Gene families : OG0001723 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001723_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12711
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00079800 HUA2,... RNA biosynthesis.transcriptional activation.HUA2... 0.04 OrthoFinder output from all 47 species
AT3G63070 No alias Tudor/PWWP/MBT domain-containing protein 0.05 OrthoFinder output from all 47 species
Adi_g019417 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009802 HUA2 HUA2-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.33G048700.1 HUA2, Ceric.33G048700 HUA2-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ehy_g25712 HUA2 HUA2-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_39860 HUA2 transcription factor (HUA2) 0.03 OrthoFinder output from all 47 species
LOC_Os03g24339.1 LOC_Os03g24339 transcription factor (HUA2) 0.03 OrthoFinder output from all 47 species
LOC_Os08g01054.2 HUA2, LOC_Os08g01054 transcription factor (HUA2) 0.05 OrthoFinder output from all 47 species
Lfl_g04290 HUA2 HUA2-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Mp8g15320.1 HUA2 transcription factor (HUA2) 0.02 OrthoFinder output from all 47 species
Sam_g30186 No alias HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo414202 HUA2 RNA biosynthesis.transcriptional activation.HUA2... 0.02 OrthoFinder output from all 47 species
Solyc02g014130.3.1 HUA2, Solyc02g014130 ENHANCER OF AG-4 protein 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc09g064840.4.1 Solyc09g064840 transcription factor (HUA2) 0.04 OrthoFinder output from all 47 species
Spa_g10511 HUA2 HUA2-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR006569 CID_dom 835 959
IPR000313 PWWP_dom 25 111
No external refs found!