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  5. Nbi_g12684

Nbi_g12684


Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: none


Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12684

Target Alias Description ECC score Gene Family Method Actions
Adi_g086844 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Als_g09594 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Aob_g26394 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.05 OrthoFinder output from all 47 species
Ceric.23G086900.1 Ceric.23G086900 component *(SOP1) of PAXT RNA-exosome-activation complex... 0.02 OrthoFinder output from all 47 species
Len_g41224 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Ore_g44276 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Pir_g15166 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
Ppi_g15340 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Tin_g16673 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Zm00001e037509_P004 Zm00001e037509 RNA degradation surveillance factor (SOP1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!