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  5. Nbi_g12400

Nbi_g12400


Description : protein involved in PS-II assembly *(HCF244) & original description: none


Gene families : OG0005073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00228610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT4G35250 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g20709 No alias protein involved in PS-II assembly *(HCF244) & original... 0.04 OrthoFinder output from all 47 species
Ala_g14214 No alias protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
Aob_g08922 No alias protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
Aop_g02819 No alias protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene42667.t1 Aspi01Gene42667 protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
Cba_g00840 No alias protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
Ceric.07G004000.1 Ceric.07G004000 protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
Cre02.g142146 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dcu_g02684 No alias protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
Dde_g15071 No alias protein involved in PS-II assembly *(HCF244) & original... 0.08 OrthoFinder output from all 47 species
Ehy_g32101 No alias protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01023933001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
LOC_Os08g44000.1 LOC_Os08g44000 HCF244 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Len_g09839 No alias protein involved in PS-II assembly *(HCF244) & original... 0.07 OrthoFinder output from all 47 species
Lfl_g02979 No alias protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
MA_10432153g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10437102g0010 No alias HCF244 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Mp8g06810.1 No alias HCF244 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Ore_g03288 No alias protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
Pir_g14964 No alias protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g13694 No alias protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
Sam_g18478 No alias protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
Smo235693 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Solyc01g112060.4.1 Solyc01g112060 HCF244 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Spa_g11765 No alias protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e003972_P002 Zm00001e003972 HCF244 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR008030 NmrA-like 97 319
No external refs found!