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Nbi_g12291 (RPT3)


Aliases : RPT3

Description : regulatory component *(RPT3) of 26S proteasome & original description: none


Gene families : OG0002973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12291
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT5G58290 RPT3 regulatory particle triple-A ATPase 3 0.04 OrthoFinder output from all 47 species
Adi_g077047 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ala_g15061 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.46 RPT3 26S proteasome regulatory subunit 6B homolog... 0.04 OrthoFinder output from all 47 species
Cre09.g402450 RPT3 Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
GSVIVT01024544001 RPT3 Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
LOC_Os02g21970.1 RPT3, LOC_Os02g21970 regulatory component RPT3 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Mp8g10830.1 RPT3 regulatory component RPT3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Msp_g01130 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ppi_g15414 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011798 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Sam_g35578 No alias regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 197 330
IPR041569 AAA_lid_3 353 395
IPR032501 Prot_ATP_ID_OB_C 84 139
No external refs found!