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  5. Nbi_g12025

Nbi_g12025 (PKL, GYM, CHR6, SSL2, CHD3)


Aliases : PKL, GYM, CHR6, SSL2, CHD3

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12025

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00148990 SYD, CHR3,... Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
AT2G13370 CHR5 chromatin remodeling 5 0.04 OrthoFinder output from all 47 species
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.04 OrthoFinder output from all 47 species
Adi_g082550 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107421 SYD, CHR3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04898 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g13876 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Ala_g11507 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ala_g12634 PKL, GYM, CHR6,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g17670 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ala_g27421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36219 ATCHR12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01984 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Als_g05142 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56902 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aob_g29249 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene16597.t1 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24030.t1 CHR5, Aspi01Gene24030 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25758.t1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47132.t1 SYD, CHR3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52538.t1 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013433 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.10G020300.1 CHR5, Ceric.10G020300 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.37G008600.1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021623.13 PKL, GYM, CHR6,... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Cre03.g179300 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cre09.g390000 CHR17 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Dcu_g03216 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Dcu_g07767 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38948 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42511 PKL, GYM, CHR6,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.05 OrthoFinder output from all 47 species
GSVIVT01017791001 CHR17 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01017820001 SYD, CHR3 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01037235001 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
Gb_15026 No alias chromatin remodeling factor (Alc) 0.04 OrthoFinder output from all 47 species
Gb_18673 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Gb_27153 ATCHR12 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Len_g11421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04300 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04983 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Lfl_g16058 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Lfl_g30624 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
MA_10429361g0010 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.04 OrthoFinder output from all 47 species
MA_10430012g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
Mp4g00040.1 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Msp_g15707 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Pir_g11423 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g16204 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29220 No alias component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Solyc08g029130.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Solyc11g062010.3.1 SYD, CHR3, Solyc11g062010 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species
Spa_g12616 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17788 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 105 147
IPR023780 Chromo_domain 244 292
IPR023780 Chromo_domain 173 204
IPR009462 CHD_II_SANT-like 996 1126
IPR000330 SNF2_N 352 639
IPR001650 Helicase_C 669 776
IPR009463 DUF1087 898 954
No external refs found!