AT1G45474 (LHCA5)


Aliases : LHCA5

Description : photosystem I light harvesting complex gene 5


Gene families : OG_01_0007496 (Gene family) Phylogenetic Tree(s): OG0007496_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT1G45474
Cluster HCCA cluster: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cre06.g272650 No alias 1.1.2.1 PS.lightreaction.photosystem I.LHC-I Encodes a... 0.05 Gene family
Cre16.g687900 No alias 1.1.2.1 PS.lightreaction.photosystem I.LHC-I Encodes a... 0.04 Gene family
GSVIVT01009498001 No alias 1.1.2.1 PS.lightreaction.photosystem I.LHC-I Encodes a... 0.19 Gene family
LOC_Os02g52650 Os02g0764500 1.1.2.1 PS.lightreaction.photosystem I.LHC-I Encodes a... 0.2 Gene family
Smo403333 PACid_15406423 No description available 0.1 Gene family
Solyc07g022900.3.1 Solyc07g022900.3 1.1.2.1 PS.lightreaction.photosystem I.LHC-I Encodes a... 0.27 Gene family
Zm00001d018157 GRMZM2G103101 1.1.2.1 PS.lightreaction.photosystem I.LHC-I Encodes a... 0.18 Gene family

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing RCA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009535 chloroplast thylakoid membrane IDA Arabidopsis.org
BP GO:0009657 plastid organization RCA Arabidopsis.org
BP GO:0009768 photosynthesis, light harvesting in photosystem I IGI Arabidopsis.org
CC GO:0009782 photosystem I antenna complex IDA Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0010207 photosystem II assembly RCA Arabidopsis.org
BP GO:0015979 photosynthesis ISS Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0030076 light-harvesting complex ISS Arabidopsis.org
MF GO:0031409 pigment binding IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 55 224
No external refs found!