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  5. Nbi_g11813

Nbi_g11813


Description : splicing factor *(SR45a) & original description: none


Gene families : OG0001089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11813

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00209460 evm_27.TU.AmTr_v1... Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Adi_g058898 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07726 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23958 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37453.t3 Aspi01Gene37453 splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011847 No alias splicing factor *(SR45a) & original description: CDS=115-1053 0.02 OrthoFinder output from all 47 species
Cba_g24697 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G057600.1 Ceric.36G057600 splicing factor *(SR45a) & original description:... 0.02 OrthoFinder output from all 47 species
Gb_20180 No alias Serine/arginine-rich splicing factor SR45a... 0.01 OrthoFinder output from all 47 species
Mp3g15540.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Msp_g17120 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g076670.3.1 Solyc06g076670 Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Spa_g07839 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27155 No alias splicing factor *(SR45a) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 48 117
No external refs found!