Nbi_g11692 (STA1, EMB2770)

Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: none

Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g11692

Target	Alias	Description	ECC score	Gene Family Method
AT4G03430	STA1, EMB2770	pre-mRNA splicing factor-related	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000880.19	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre14.g633650	STA1, EMB2770	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Dac_g11214	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Dcu_g14994	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01030385001	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Len_g00746	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Mp6g10790.1	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Msp_g06219	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Ore_g19399	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Pnu_g09703	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Ppi_g32052	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002228	STA1, EMB2770	regulatory protein of poly(A) RNA polymerase activity &...	0.04	OrthoFinder output from all 47 species
Sam_g26501	No alias	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Tin_g02882	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR010491	PRP1_N	97	265

External Links

No external refs found!

Nbi_g11692 (STA1, EMB2770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation