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  5. Nbi_g11307

Nbi_g11307 (HTA10)


Aliases : HTA10

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11307

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 HTA6,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
AMTR_s00058p00158560 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Ala_g17952 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11673 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g42967 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09992 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09993 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30450 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10197.t1 RAT5, HTA1,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48036.t1 HTA7, Aspi01Gene48036 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene48040.t1 HTA7, Aspi01Gene48040 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0102.g044568 HTA6 histone *(H2A) & original description: CDS=1-438 0.03 OrthoFinder output from all 47 species
Dac_g06100 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11808 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10226 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01002735001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
GSVIVT01002746001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
GSVIVT01011034001 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
GSVIVT01025019001 HTA12 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Gb_39944 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os01g31800.1 HTA12, LOC_Os01g31800 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os08g33100.1 HTA2, LOC_Os08g33100 histone (H2A) 0.03 OrthoFinder output from all 47 species
Len_g02525 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g03984 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05644 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55104 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_7320190g0010 HTA6 histone (H2A) 0.03 OrthoFinder output from all 47 species
Msp_g06768 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07187 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g14792 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63798 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g010400.3.1 HTA12, Solyc09g010400 histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc09g074300.1.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc11g073260.2.1 HTA12, Solyc11g073260 histone (H2A) 0.03 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03221 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12865 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 90 122
IPR007125 Histone_H2A/H2B/H3 11 87
No external refs found!