Nbi_g10516

Description : subunit gamma of cargo adaptor F-subcomplex & original description: none

Gene families : OG0004080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004080_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g10516
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00069290	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	OrthoFinder output from all 47 species
AT4G34450	No alias	coatomer gamma-2 subunit, putative / gamma-2 coat...	0.07	OrthoFinder output from all 47 species
Adi_g106385	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Aev_g14556	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.05	OrthoFinder output from all 47 species
Aev_g44391	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Ala_g05681	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Als_g23314	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Aob_g15373	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Aop_g06505	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.09	OrthoFinder output from all 47 species
Cba_g11359	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Cba_g22384	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Ceric.04G110200.1	Ceric.04G110200	subunit gamma of cargo adaptor F-subcomplex & original...	0.12	OrthoFinder output from all 47 species
Ceric.28G060100.1	Ceric.28G060100	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.20	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
Cre06.g310750	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.06	OrthoFinder output from all 47 species
Dcu_g01867	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.12	OrthoFinder output from all 47 species
Dde_g05374	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.05	OrthoFinder output from all 47 species
Ehy_g29298	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01031955001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.13	OrthoFinder output from all 47 species
Gb_36850	No alias	subunit gamma of cargo adaptor F-subcomplex	0.09	OrthoFinder output from all 47 species
Gb_36851	No alias	Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
LOC_Os03g12590.1	LOC_Os03g12590	subunit gamma of cargo adaptor F-subcomplex	0.13	OrthoFinder output from all 47 species
LOC_Os07g10150.1	LOC_Os07g10150	subunit gamma of cargo adaptor F-subcomplex	0.11	OrthoFinder output from all 47 species
Len_g13320	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Lfl_g02207	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.06	OrthoFinder output from all 47 species
Mp1g05250.1	No alias	subunit gamma of cargo adaptor F-subcomplex	0.08	OrthoFinder output from all 47 species
Msp_g24101	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.1	OrthoFinder output from all 47 species
Ore_g06577	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Pir_g10430	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.05	OrthoFinder output from all 47 species
Ppi_g01355	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011888	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Smo268757	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.09	OrthoFinder output from all 47 species
Solyc01g109540.4.1	Solyc01g109540	subunit gamma of cargo adaptor F-subcomplex	0.09	OrthoFinder output from all 47 species
Spa_g17860	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.12	OrthoFinder output from all 47 species
Tin_g11774	No alias	subunit gamma of cargo adaptor F-subcomplex & original...	0.07	OrthoFinder output from all 47 species
Zm00001e000949_P001	Zm00001e000949	subunit gamma of cargo adaptor F-subcomplex	0.12	OrthoFinder output from all 47 species
Zm00001e011398_P002	Zm00001e011398	subunit gamma of cargo adaptor F-subcomplex	0.1	OrthoFinder output from all 47 species
Zm00001e033065_P001	Zm00001e033065	subunit gamma of cargo adaptor F-subcomplex	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030906	retromer, cargo-selective complex	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013040	Coatomer_gsu_app_Ig-like_dom	632	776
IPR002553	Clathrin/coatomer_adapt-like_N	31	543
IPR032154	Coatomer_g_Cpla	779	893

External Links

No external refs found!

Nbi_g10516

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation