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  5. Nbi_g09038

Nbi_g09038 (emb2734)


Aliases : emb2734

Description : nucleocytoplasmic import karyopherin *(IMB3) & original description: none


Gene families : OG0001766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001766_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g09038

Target Alias Description ECC score Gene Family Method Actions
AT5G19820 emb2734 ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g02620 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.02 OrthoFinder output from all 47 species
Ceric.26G014000.1 emb2734, Ceric.26G014000 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.02 OrthoFinder output from all 47 species
Dac_g02379 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g04981 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01033417001 emb2734 Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Gb_38404 emb2734 IMB3 nucleocytoplasmic import karyopherin 0.04 OrthoFinder output from all 47 species
Len_g16328 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g10978 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.04 OrthoFinder output from all 47 species
MA_10432206g0010 emb2734 IMB3 nucleocytoplasmic import karyopherin 0.03 OrthoFinder output from all 47 species
MA_10432351g0030 emb2734 IMB3 nucleocytoplasmic import karyopherin 0.03 OrthoFinder output from all 47 species
Mp3g07820.1 emb2734 IMB3 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Ore_g30249 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.02 OrthoFinder output from all 47 species
Pp3c7_4470V3.1 emb2734, Pp3c7_4470 ARM repeat superfamily protein 0.01 OrthoFinder output from all 47 species
Smo140234 emb2734 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Spa_g12761 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR041389 Importin_rep_6 780 887
IPR041653 Importin_rep_4 280 371
IPR000357 HEAT 920 948
No external refs found!