Nbi_g08999


Description : RNA editing factor *(PDM2) & original description: none


Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08999

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00085920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10910,... 0.06 OrthoFinder output from all 47 species
Adi_g083413 No alias RNA editing factor *(PDM2) & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g25987 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25084 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g17655 No alias RNA editing factor *(PDM2) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g24122 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g00767 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene04186.t1 Aspi01Gene04186 RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14195.t1 Aspi01Gene14195 RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008523 No alias RNA editing factor *(PDM2) & original description: CDS=36-2303 0.04 OrthoFinder output from all 47 species
Cba_g02683 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05612 No alias RNA editing factor *(PDM2) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11807 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13080 No alias RNA editing factor *(PDM2) & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os01g37870.4 LOC_Os01g37870 Pentatricopeptide repeat-containing protein At1g10910,... 0.03 OrthoFinder output from all 47 species
Len_g08792 No alias RNA editing factor *(PDM2) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08793 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10433 No alias RNA editing factor *(PDM2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10589 No alias RNA editing factor *(PDM2) & original description: none 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0141.g022758 No alias RNA editing factor *(PDM2) & original description: CDS=659-2260 0.02 OrthoFinder output from all 47 species
Sam_g19491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e020710_P002 Zm00001e020710 Pentatricopeptide repeat-containing protein At1g10910,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 257 400
IPR002885 Pentatricopeptide_repeat 599 621
IPR002885 Pentatricopeptide_repeat 487 535
IPR002885 Pentatricopeptide_repeat 415 464
IPR002885 Pentatricopeptide_repeat 546 591
No external refs found!