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  5. Nbi_g08860

Nbi_g08860 (VAM3, ATVAM3,...)


Aliases : VAM3, ATVAM3, ATSYP22, SGR3, SYP22

Description : Qa-type SYP2-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0001469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08860

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.18 No alias Vesicle trafficking.SNARE target membrane recognition... 0.01 OrthoFinder output from all 47 species
Mp8g15260.1 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Msp_g13183 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Solyc08g005200.3.1 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Spa_g22866 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004615 phosphomannomutase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009298 GDP-mannose biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0019673 GDP-mannose metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 25 124
IPR000727 T_SNARE_dom 213 265
No external refs found!