Nbi_g08860 (VAM3, ATVAM3,...)


Aliases : VAM3, ATVAM3, ATSYP22, SGR3, SYP22

Description : Qa-type SYP2-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0007410 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0007410_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08860

Target Alias Description ECC score Gene Family Method Actions
Dcu_g50106 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 39 species
Len_g04655 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 39 species
Pir_g10644 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 39 species
Spa_g22866 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004615 phosphomannomutase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009298 GDP-mannose biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0019673 GDP-mannose metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 25 124
IPR000727 T_SNARE_dom 213 265
No external refs found!