Nbi_g08626


Description : stromal sorting factor of thylakoid membrane SRP insertion system *(STIC2) & original description: none


Gene families : OG0004403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004403_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08626
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT2G24020 No alias Uncharacterised BCR, YbaB family COG0718 0.05 OrthoFinder output from all 47 species
AT4G30620 No alias Uncharacterised BCR, YbaB family COG0718 0.03 OrthoFinder output from all 47 species
Aev_g04539 No alias stromal sorting factor of thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
Ala_g00370 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Aop_g70924 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Ceric.29G037500.1 Ceric.29G037500 stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Cre10.g458550 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
GSVIVT01023623001 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.05 OrthoFinder output from all 47 species
Gb_22716 No alias stromal sorting factor of thylakoid membrane SRP... 0.08 OrthoFinder output from all 47 species
LOC_Os02g08380.1 LOC_Os02g08380 stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Len_g22373 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Lfl_g00568 No alias stromal sorting factor of thylakoid membrane SRP... 0.05 OrthoFinder output from all 47 species
Mp2g03740.1 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Pir_g17206 No alias stromal sorting factor of thylakoid membrane SRP... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009199 No alias stromal sorting factor of thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Spa_g06795 No alias stromal sorting factor of thylakoid membrane SRP... 0.06 OrthoFinder output from all 47 species
Spa_g40192 No alias stromal sorting factor of thylakoid membrane SRP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004401 YbaB/EbfC 86 171
No external refs found!