Description : stromal sorting factor of thylakoid membrane SRP insertion system *(STIC2) & original description: none
Gene families : OG0004403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004403_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Nbi_g08626 | |
Cluster | HCCA: Cluster_163 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G24020 | No alias | Uncharacterised BCR, YbaB family COG0718 | 0.05 | OrthoFinder output from all 47 species | |
AT4G30620 | No alias | Uncharacterised BCR, YbaB family COG0718 | 0.03 | OrthoFinder output from all 47 species | |
Aev_g04539 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g00370 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g70924 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G037500.1 | Ceric.29G037500 | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Cre10.g458550 | No alias | Protein translocation.chloroplast.thylakoid membrane SRP... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01023623001 | No alias | Protein translocation.chloroplast.thylakoid membrane SRP... | 0.05 | OrthoFinder output from all 47 species | |
Gb_22716 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os02g08380.1 | LOC_Os02g08380 | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Len_g22373 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g00568 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.05 | OrthoFinder output from all 47 species | |
Mp2g03740.1 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Pir_g17206 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0024.g009199 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g06795 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g40192 | No alias | stromal sorting factor of thylakoid membrane SRP... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0004109 | coproporphyrinogen oxidase activity | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
CC | GO:0048500 | signal recognition particle | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051668 | localization within membrane | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR004401 | YbaB/EbfC | 86 | 171 |
No external refs found! |