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  5. Nbi_g07560

Nbi_g07560 (SS2, AtSS2)


Aliases : SS2, AtSS2

Description : EC_2.4 glycosyltransferase & original description: none


Gene families : OG0001429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g07560
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.09 OrthoFinder output from all 47 species
Als_g20539 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32464 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011429001 SS2, AtSS2 Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
LOC_Os02g51070.1 SS2, AtSS2,... starch synthase (SSII) 0.02 OrthoFinder output from all 47 species
LOC_Os06g06560.1 SSI1, ATSS1,... starch synthase (SSI) 0.03 OrthoFinder output from all 47 species
Lfl_g19481 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g25350.1 SSI1, ATSS1, SSI starch synthase (SSI) 0.04 OrthoFinder output from all 47 species
Solyc02g088000.3.1 SS2, AtSS2,... starch synthase (SSII) 0.03 OrthoFinder output from all 47 species
Zm00001e030868_P001 SS2, AtSS2,... starch synthase (SSII) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016757 glycosyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 274 517
IPR001296 Glyco_trans_1 576 717
No external refs found!