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  5. Nbi_g06629

Nbi_g06629


Description : not classified & original description: none


Gene families : OG0005577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06629
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00240690 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase/oxygenase activase,... 0.02 OrthoFinder output from all 47 species
AT1G73110 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Aev_g06596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14641 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.08G032500.1 Ceric.08G032500 not classified & original description: pacid=50638582... 0.03 OrthoFinder output from all 47 species
Dcu_g24022 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g18676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016062001 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.04 OrthoFinder output from all 47 species
LOC_Os04g56320.1 LOC_Os04g56320 Ribulose bisphosphate carboxylase/oxygenase activase 2,... 0.05 OrthoFinder output from all 47 species
Len_g50097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04649 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10428784g0010 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.03 OrthoFinder output from all 47 species
MA_379291g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g04090.1 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.04 OrthoFinder output from all 47 species
Msp_g02450 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ore_g19785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07975 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g58392 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020487 No alias not classified & original description: CDS=305-1777 0.03 OrthoFinder output from all 47 species
Smo82367 No alias Ribulose bisphosphate carboxylase/oxygenase activase,... 0.03 OrthoFinder output from all 47 species
Solyc03g117850.4.1 Solyc03g117850 Ribulose bisphosphate carboxylase/oxygenase activase,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 193 336
No external refs found!