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  5. Nbi_g05689

Nbi_g05689 (CHMP1A, VPS46.2)


Aliases : CHMP1A, VPS46.2

Description : associated protein of ESCRT-III complex *(VPS46/CHMP1) & original description: none


Gene families : OG0001221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05689

Target Alias Description ECC score Gene Family Method Actions
Als_g37412 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.04 OrthoFinder output from all 47 species
Als_g38525 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
Aob_g02855 CHMP1B, VPS46.1 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01016898001 CHMP1A, VPS46.2 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 OrthoFinder output from all 47 species
Len_g10600 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.06 OrthoFinder output from all 47 species
Len_g55895 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
Mp5g17770.1 CHMP1B, VPS46.1 VPS46/CHMP1 associated protein of ESCRT-III complex 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001940 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
Solyc03g121360.1.1 CHMP1B, VPS46.1,... VPS46/CHMP1 associated protein of ESCRT-III complex 0.06 OrthoFinder output from all 47 species
Spa_g08488 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.05 OrthoFinder output from all 47 species
Spa_g08489 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 15 175
No external refs found!