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  5. Nbi_g05357

Nbi_g05357


Description : not classified & original description: none


Gene families : OG0000417 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000417_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05357
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00123820 evm_27.TU.AmTr_v1... Protein S-acyltransferase 18 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT4G01730 No alias DHHC-type zinc finger family protein 0.06 OrthoFinder output from all 47 species
Ceric.03G025100.1 Ceric.03G025100 protein S-acyltransferase *(PAT19-21) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028245001 No alias Protein S-acyltransferase 18 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_39365 No alias Protein S-acyltransferase 18 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
LOC_Os10g19180.1 LOC_Os10g19180 Probable protein S-acyltransferase 22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os12g16210.1 LOC_Os12g16210 Protein S-acyltransferase 18 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Len_g28393 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g32206 No alias protein S-acyltransferase *(PAT22) & original description: none 0.04 OrthoFinder output from all 47 species
MA_18425g0010 No alias Protein S-acyltransferase 18 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Msp_g13231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0177.g024642 No alias not classified & original description: CDS=1-2043 0.04 OrthoFinder output from all 47 species
Sam_g06468 No alias protein S-acyltransferase *(PAT22) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22334 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g35270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51517 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g079100.3.1 Solyc01g079100 Protein S-acyltransferase 18 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc05g012790.4.1 Solyc05g012790 Probable protein S-acyltransferase 22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g41711 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Zm00001e000708_P002 Zm00001e000708 Probable protein S-acyltransferase 22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e010690_P001 Zm00001e010690 Probable protein S-acyltransferase 22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e035461_P002 Zm00001e035461 Probable protein S-acyltransferase 22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016409 palmitoyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001594 Palmitoyltrfase_DHHC 160 293
No external refs found!