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  5. Nbi_g05353

Nbi_g05353 (MBD02, ATMBD2, MBD2)


Aliases : MBD02, ATMBD2, MBD2

Description : methylation reader *(MBD1-4/12) & original description: none


Gene families : OG0001754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05353

Target Alias Description ECC score Gene Family Method Actions
AT5G35330 MBD02, ATMBD2, MBD2 methyl-CPG-binding domain protein 02 0.03 OrthoFinder output from all 47 species
Pir_g21640 MBD4 methylation reader *(MBD1-4/12) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004408 holocytochrome-c synthase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011124 Znf_CW 167 217
IPR001739 Methyl_CpG_DNA-bd 230 288
No external refs found!